ndst1 guide rnas  (Broad Institute Inc)

Journal: The Journal of Biological Chemistry

Article Title: Hepatic heparan sulfate is a master regulator of hepcidin expression and iron homeostasis in human hepatocytes and mice

doi: 10.1074/jbc.RA118.007213

Figure Lengend Snippet: Inactivation of NDST1 in Hep3B cells exhibits reduced hepcidin expression. A , sequence analysis of a region within exon-1 of NDST1 in WT Hep3B cells and in a cloned cell line obtained by targeting NDST1 by CRISPR/Cas9 ( NDST1 −/− ). The arrows indicate the start site of the altered DNA sequence in the mutant and the predicted amino acid sequence. Each allele results in a downstream frameshift mutation. B , FGF2 binding to WT and NDST1 −/− Hep3B cells. Loss of NDST1 results in diminished binding of FGF2 to HS. A set of WT cells were treated with heparin lyases I, II, and III (5 milliunits/ml) prior to flow cytometry ( n = 3 biological replicates, each performed in duplicate). The data were analyzed using one-way ANOVA with Tukey's multiple comparison test. C , HS from WT ( white bars ) and NDST1 −/− ( black bars ) cells were digested with heparin lyases I, II, and III and the liberated disaccharides were analyzed by LC-MS: D0H6, ΔUA-GlcNH 2 6S; D2H0, ΔUA2S-GlcNH 2 ; D0A0, ΔUA-GlcNAc; D0S0, ΔUA-GlcNS; D2H6, ΔUA2S-GlcNH 2 6S; D0A6, ΔUA-GlcNAc6S; D0S6, ΔUA-GlcNS6S; D2A0, ΔUA2S-GlcNAc; D2S0, ΔUA2S-GlcNS; D2A6, ΔUA2S-GlcNAc6S; D2S6, ΔUA2S-GlcNS6S; ΔUA, 4,5-unsaturated uronic acid . Disaccharide analysis was performed on a pool of three sets of cells ( n = 3 biological replicates that were pooled and analyzed). D , WT and NDST1 −/− cells were incubated with and without BMP6 (50 ng/ml) for 6 h and expression of HAMP mRNA was measured and normalized to GAPDH ( n = 2 wells). The data were analyzed using two-way ANOVA with uncorrected Fisher's least significant difference post hoc test.

Article Snippet: Mutant cell lines lacking GlcNAc N -deacetylase N -sulfotransferase-1 ( NDST1 −/− ) were generated using NDST1 guide RNAs designed according to Broad Institute published resources ( ) and were synthesized by ValueGene.

Techniques: Expressing, Sequencing, Clone Assay, CRISPR, Mutagenesis, Binding Assay, Flow Cytometry, Comparison, Liquid Chromatography with Mass Spectroscopy, Incubation

Journal: The Journal of Biological Chemistry

Article Title: Hepatic heparan sulfate is a master regulator of hepcidin expression and iron homeostasis in human hepatocytes and mice

doi: 10.1074/jbc.RA118.007213

Figure Lengend Snippet: Reduction of HAMP expression and pSMAD5 in primary hepatocytes derived from Ndst1 f/f AlbCre + mice. A , level of Ndst1 mRNA in hepatocytes derived from Ndst1 f/f AlbCre − (control) and Ndst1 f/f AlbCre + (mutant) mice. B , level of NDST1 protein. C , level of Hamp mRNA. D , SMAD5 phosphorylation in primary hepatocytes derived from Ndst1 f/f AlbCre − and Ndst1 f/f AlbCre + mice treated with different concentrations of BMP6 for 6 h. Densitometry was performed using ImageJ and the values were normalized to SMAD5 as indicated ( n = 2).

Article Snippet: Mutant cell lines lacking GlcNAc N -deacetylase N -sulfotransferase-1 ( NDST1 −/− ) were generated using NDST1 guide RNAs designed according to Broad Institute published resources ( ) and were synthesized by ValueGene.

Techniques: Expressing, Derivative Assay, Control, Mutagenesis, Phospho-proteomics

Journal: The Journal of Biological Chemistry

Article Title: Hepatic heparan sulfate is a master regulator of hepcidin expression and iron homeostasis in human hepatocytes and mice

doi: 10.1074/jbc.RA118.007213

Figure Lengend Snippet: Iron metabolism in Ndst1 f/f AlbCre + mice is altered. A , control Ndst1 f/f AlbCre − mice and mutant Ndst1 f/f AlbCre + mice were fed an iron-balanced diet ( IBD ) for 1 week (0 time point) and then switched to a iron-rich diet ( IRD ) for 1 or 3 weeks. B and C , Hamp mRNA ( B ) and serum hepcidin ( C ) were analyzed at the indicated time points. RNA expression was normalized to Tbp mRNA expression and the values were scaled to the values for the Ndst1 f/f AlbCre − control at the 0 time point. D , serum iron was measured at 0, 1, and 3 weeks. E and G , nonheme iron was measured by spectrophotometric assay in ( E ) liver and ( G ) spleen. F , representative image of Prussian blue stain and DAB enhancement of ferritin-iron in the liver of Ndst1 f/f AlbCre − and Ndst1 f/f AlbCre + mice at 0, 1, and 3 weeks of IRD. H , Western blot analysis of FPN, TfR1, FtL, pSMAD5, and SMAD5. The bands were quantitated with ImageJ and the values of pSMAD5 were normalized to SMAD5. All other band values were normalized to GAPDH ( n = 3 mice per group). Each point in B–F represents individual Ndst1 f/f AlbCre − ( open circles ) and Ndst1 f/f AlbCre + ( filled circles ) mice. Statistical analysis was performed by two-way ANOVA, t test and yielded the indicated p values.

Article Snippet: Mutant cell lines lacking GlcNAc N -deacetylase N -sulfotransferase-1 ( NDST1 −/− ) were generated using NDST1 guide RNAs designed according to Broad Institute published resources ( ) and were synthesized by ValueGene.

Techniques: Control, Mutagenesis, RNA Expression, Expressing, Spectrophotometric Assay, Staining, Western Blot

Journal: The Journal of Biological Chemistry

Article Title: Hepatic heparan sulfate is a master regulator of hepcidin expression and iron homeostasis in human hepatocytes and mice

doi: 10.1074/jbc.RA118.007213

Figure Lengend Snippet: HS modulates IL6-induced HAMP mRNA expression in human hepatocytes. A , hepatocytes derived from Ndst1 f/f AlbCre + and Ndst1 f/f AlbCre − mice were treated with IL6 (50 ng/ml, 6 h), and Hamp mRNA was quantitated by qPCR ( n = 2). B , HepG2 cells were treated with 20 μ m surfen, and IL6 (50 ng/ml) was added for 6 h. The cells were collected for HAMP mRNA quantification by qPCR ( n = 4–7). C , HepG2 cells were treated with siRNAs to EXT1 and EXT2 or to GFP and after 48 h HAMP mRNA expression was measured. IL6 (50 ng/ml) was added during the last 6 h as indicated. D , Western blot analysis of pSTAT3. The bands were quantitated with ImageJ and expressed relative to STAT3 and then normalized to the values obtained from the untreated control ( n = 2–4). E , SOCS3 mRNA expression was measured in HepG2 cells treated with 20 μ m surfen with and without IL6 (50 ng/ml, 6 h). The values were normalized to HPRT1 expression and scaled to the value obtained in the absence of surfen and IL6 ( n = 3). F , HepG2 cells were treated with siRNAs to EXT1 and EXT2 or to GFP and after 48 h SOCS3 mRNA expression was measured. IL6 (50 ng/ml) was added during the last 6 h in some of the cultures. Values for mRNA expression were normalized to HPRT1 in the samples and expressed as the -fold change over the untreated cells ( n = 3).

Article Snippet: Mutant cell lines lacking GlcNAc N -deacetylase N -sulfotransferase-1 ( NDST1 −/− ) were generated using NDST1 guide RNAs designed according to Broad Institute published resources ( ) and were synthesized by ValueGene.

Techniques: Expressing, Derivative Assay, Western Blot, Control

Journal: The Journal of Biological Chemistry

Article Title: Hepatic heparan sulfate is a master regulator of hepcidin expression and iron homeostasis in human hepatocytes and mice

doi: 10.1074/jbc.RA118.007213

Figure Lengend Snippet: Reduced sulfation of HS in Ndst1 f/f AlbCre + decreases Hamp mRNA and plasma hepcidin after LPS injection. Ndst1 f/f AlbCre + and Ndst1 f/f AlbCre − mice were fed an iron-balanced diet for 1 week and then treated with a single intraperitoneal dose of LPS (1 mg/kg). After 6 h, mice were sacrificed. A , liver Socs3 mRNA level was measured and normalized to Tbp mRNA. B , Hamp mRNA was measured in the liver and normalized to Tbp mRNA. C , serum hepcidin was measured before and after LPS treatment. D–F , serum iron ( D ), nonheme liver iron ( E ), and nonheme spleen iron ( F ) were measured by a spectrophotometric assay after PBS or LPS injection. G , hepatic pSTAT3 and pSMAD5 were measured by Western blotting. After quantitation of the bands by Image J, the values were normalized to STAT3 and SMAD5, respectively. H , Hep3B WT and NDST1 −/− cells were transfected with pGL2Hamp-luciferase and pGL2TK-Renilla plasmid along with scrambled siRNA and STAT3 siRNA and stimulated with 50 ng/ml of IL6 for 6 h. Luciferase and Renilla activity were measured. I , Hep3B WT and NDST1 −/− cells were transfected with pGL2Hamp-luciferase and pGL2TK-Renilla plasmid along with scrambled siRNA and SMAD5 siRNA and stimulated with 50 ng/ml of BMP6 for 6 h. Luciferase and Renilla activity were measured. n = 2 biological experiment done in triplicate. The data in each of the panels were analyzed by two-way ANOVA with post hoc Bonferroni multiple comparison test.

Article Snippet: Mutant cell lines lacking GlcNAc N -deacetylase N -sulfotransferase-1 ( NDST1 −/− ) were generated using NDST1 guide RNAs designed according to Broad Institute published resources ( ) and were synthesized by ValueGene.

Techniques: Clinical Proteomics, Injection, Spectrophotometric Assay, Western Blot, Quantitation Assay, Transfection, Luciferase, Plasmid Preparation, Activity Assay, Comparison

Journal: The Journal of Biological Chemistry

Article Title: Hepatic heparan sulfate is a master regulator of hepcidin expression and iron homeostasis in human hepatocytes and mice

doi: 10.1074/jbc.RA118.007213

Figure Lengend Snippet: Inactivation of NDST1 in Hep3B cells exhibits reduced hepcidin expression. A , sequence analysis of a region within exon-1 of NDST1 in WT Hep3B cells and in a cloned cell line obtained by targeting NDST1 by CRISPR/Cas9 ( NDST1 −/− ). The arrows indicate the start site of the altered DNA sequence in the mutant and the predicted amino acid sequence. Each allele results in a downstream frameshift mutation. B , FGF2 binding to WT and NDST1 −/− Hep3B cells. Loss of NDST1 results in diminished binding of FGF2 to HS. A set of WT cells were treated with heparin lyases I, II, and III (5 milliunits/ml) prior to flow cytometry ( n = 3 biological replicates, each performed in duplicate). The data were analyzed using one-way ANOVA with Tukey's multiple comparison test. C , HS from WT ( white bars ) and NDST1 −/− ( black bars ) cells were digested with heparin lyases I, II, and III and the liberated disaccharides were analyzed by LC-MS: D0H6, ΔUA-GlcNH 2 6S; D2H0, ΔUA2S-GlcNH 2 ; D0A0, ΔUA-GlcNAc; D0S0, ΔUA-GlcNS; D2H6, ΔUA2S-GlcNH 2 6S; D0A6, ΔUA-GlcNAc6S; D0S6, ΔUA-GlcNS6S; D2A0, ΔUA2S-GlcNAc; D2S0, ΔUA2S-GlcNS; D2A6, ΔUA2S-GlcNAc6S; D2S6, ΔUA2S-GlcNS6S; ΔUA, 4,5-unsaturated uronic acid . Disaccharide analysis was performed on a pool of three sets of cells ( n = 3 biological replicates that were pooled and analyzed). D , WT and NDST1 −/− cells were incubated with and without BMP6 (50 ng/ml) for 6 h and expression of HAMP mRNA was measured and normalized to GAPDH ( n = 2 wells). The data were analyzed using two-way ANOVA with uncorrected Fisher's least significant difference post hoc test.

Article Snippet: Mutant cell lines lacking GlcNAc N -deacetylase N -sulfotransferase-1 ( NDST1 −/− ) were generated using NDST1 guide RNAs designed according to Broad Institute published resources ( ) and were synthesized by ValueGene.

Techniques: Expressing, Sequencing, Clone Assay, CRISPR, Mutagenesis, Binding Assay, Flow Cytometry, Comparison, Liquid Chromatography with Mass Spectroscopy, Incubation

Journal: The Journal of Biological Chemistry

Article Title: Hepatic heparan sulfate is a master regulator of hepcidin expression and iron homeostasis in human hepatocytes and mice

doi: 10.1074/jbc.RA118.007213

Figure Lengend Snippet: Reduction of HAMP expression and pSMAD5 in primary hepatocytes derived from Ndst1 f/f AlbCre + mice. A , level of Ndst1 mRNA in hepatocytes derived from Ndst1 f/f AlbCre − (control) and Ndst1 f/f AlbCre + (mutant) mice. B , level of NDST1 protein. C , level of Hamp mRNA. D , SMAD5 phosphorylation in primary hepatocytes derived from Ndst1 f/f AlbCre − and Ndst1 f/f AlbCre + mice treated with different concentrations of BMP6 for 6 h. Densitometry was performed using ImageJ and the values were normalized to SMAD5 as indicated ( n = 2).

Article Snippet: Mutant cell lines lacking GlcNAc N -deacetylase N -sulfotransferase-1 ( NDST1 −/− ) were generated using NDST1 guide RNAs designed according to Broad Institute published resources ( ) and were synthesized by ValueGene.

Techniques: Expressing, Derivative Assay, Control, Mutagenesis, Phospho-proteomics

Journal: The Journal of Biological Chemistry

Article Title: Hepatic heparan sulfate is a master regulator of hepcidin expression and iron homeostasis in human hepatocytes and mice

doi: 10.1074/jbc.RA118.007213

Figure Lengend Snippet: Iron metabolism in Ndst1 f/f AlbCre + mice is altered. A , control Ndst1 f/f AlbCre − mice and mutant Ndst1 f/f AlbCre + mice were fed an iron-balanced diet ( IBD ) for 1 week (0 time point) and then switched to a iron-rich diet ( IRD ) for 1 or 3 weeks. B and C , Hamp mRNA ( B ) and serum hepcidin ( C ) were analyzed at the indicated time points. RNA expression was normalized to Tbp mRNA expression and the values were scaled to the values for the Ndst1 f/f AlbCre − control at the 0 time point. D , serum iron was measured at 0, 1, and 3 weeks. E and G , nonheme iron was measured by spectrophotometric assay in ( E ) liver and ( G ) spleen. F , representative image of Prussian blue stain and DAB enhancement of ferritin-iron in the liver of Ndst1 f/f AlbCre − and Ndst1 f/f AlbCre + mice at 0, 1, and 3 weeks of IRD. H , Western blot analysis of FPN, TfR1, FtL, pSMAD5, and SMAD5. The bands were quantitated with ImageJ and the values of pSMAD5 were normalized to SMAD5. All other band values were normalized to GAPDH ( n = 3 mice per group). Each point in B–F represents individual Ndst1 f/f AlbCre − ( open circles ) and Ndst1 f/f AlbCre + ( filled circles ) mice. Statistical analysis was performed by two-way ANOVA, t test and yielded the indicated p values.

Article Snippet: Mutant cell lines lacking GlcNAc N -deacetylase N -sulfotransferase-1 ( NDST1 −/− ) were generated using NDST1 guide RNAs designed according to Broad Institute published resources ( ) and were synthesized by ValueGene.

Techniques: Control, Mutagenesis, RNA Expression, Expressing, Spectrophotometric Assay, Staining, Western Blot

Journal: The Journal of Biological Chemistry

Article Title: Hepatic heparan sulfate is a master regulator of hepcidin expression and iron homeostasis in human hepatocytes and mice

doi: 10.1074/jbc.RA118.007213

Figure Lengend Snippet: HS modulates IL6-induced HAMP mRNA expression in human hepatocytes. A , hepatocytes derived from Ndst1 f/f AlbCre + and Ndst1 f/f AlbCre − mice were treated with IL6 (50 ng/ml, 6 h), and Hamp mRNA was quantitated by qPCR ( n = 2). B , HepG2 cells were treated with 20 μ m surfen, and IL6 (50 ng/ml) was added for 6 h. The cells were collected for HAMP mRNA quantification by qPCR ( n = 4–7). C , HepG2 cells were treated with siRNAs to EXT1 and EXT2 or to GFP and after 48 h HAMP mRNA expression was measured. IL6 (50 ng/ml) was added during the last 6 h as indicated. D , Western blot analysis of pSTAT3. The bands were quantitated with ImageJ and expressed relative to STAT3 and then normalized to the values obtained from the untreated control ( n = 2–4). E , SOCS3 mRNA expression was measured in HepG2 cells treated with 20 μ m surfen with and without IL6 (50 ng/ml, 6 h). The values were normalized to HPRT1 expression and scaled to the value obtained in the absence of surfen and IL6 ( n = 3). F , HepG2 cells were treated with siRNAs to EXT1 and EXT2 or to GFP and after 48 h SOCS3 mRNA expression was measured. IL6 (50 ng/ml) was added during the last 6 h in some of the cultures. Values for mRNA expression were normalized to HPRT1 in the samples and expressed as the -fold change over the untreated cells ( n = 3).

Article Snippet: Mutant cell lines lacking GlcNAc N -deacetylase N -sulfotransferase-1 ( NDST1 −/− ) were generated using NDST1 guide RNAs designed according to Broad Institute published resources ( ) and were synthesized by ValueGene.

Techniques: Expressing, Derivative Assay, Western Blot, Control

Journal: The Journal of Biological Chemistry

Article Title: Hepatic heparan sulfate is a master regulator of hepcidin expression and iron homeostasis in human hepatocytes and mice

doi: 10.1074/jbc.RA118.007213

Figure Lengend Snippet: Reduced sulfation of HS in Ndst1 f/f AlbCre + decreases Hamp mRNA and plasma hepcidin after LPS injection. Ndst1 f/f AlbCre + and Ndst1 f/f AlbCre − mice were fed an iron-balanced diet for 1 week and then treated with a single intraperitoneal dose of LPS (1 mg/kg). After 6 h, mice were sacrificed. A , liver Socs3 mRNA level was measured and normalized to Tbp mRNA. B , Hamp mRNA was measured in the liver and normalized to Tbp mRNA. C , serum hepcidin was measured before and after LPS treatment. D–F , serum iron ( D ), nonheme liver iron ( E ), and nonheme spleen iron ( F ) were measured by a spectrophotometric assay after PBS or LPS injection. G , hepatic pSTAT3 and pSMAD5 were measured by Western blotting. After quantitation of the bands by Image J, the values were normalized to STAT3 and SMAD5, respectively. H , Hep3B WT and NDST1 −/− cells were transfected with pGL2Hamp-luciferase and pGL2TK-Renilla plasmid along with scrambled siRNA and STAT3 siRNA and stimulated with 50 ng/ml of IL6 for 6 h. Luciferase and Renilla activity were measured. I , Hep3B WT and NDST1 −/− cells were transfected with pGL2Hamp-luciferase and pGL2TK-Renilla plasmid along with scrambled siRNA and SMAD5 siRNA and stimulated with 50 ng/ml of BMP6 for 6 h. Luciferase and Renilla activity were measured. n = 2 biological experiment done in triplicate. The data in each of the panels were analyzed by two-way ANOVA with post hoc Bonferroni multiple comparison test.

Article Snippet: Mutant cell lines lacking GlcNAc N -deacetylase N -sulfotransferase-1 ( NDST1 −/− ) were generated using NDST1 guide RNAs designed according to Broad Institute published resources ( ) and were synthesized by ValueGene.

Techniques: Clinical Proteomics, Injection, Spectrophotometric Assay, Western Blot, Quantitation Assay, Transfection, Luciferase, Plasmid Preparation, Activity Assay, Comparison